Pattern matching software

Tim Cutts tjrc1 at mole.bio.cam.ac.uk
Wed Mar 11 06:06:30 EST 1998


I am looking for some UNIX pattern matching software, similar to GCG's
findpatterns, but which will allow me to compare a protein pattern against a
nucleotide sequence database translated on the fly in all six reading
frames.  Does such a program exist?  If not I am willing to try writing
one, although I can't believe no-one has already done this...

Thanks in advance.

Tim.





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