msf sequence identity

michael.baron at bbsrc.ac.uk michael.baron at bbsrc.ac.uk
Mon Nov 23 04:21:38 EST 1998


Per Kallblad wrote:
> 
> Hi,
> 
> I would be greatful if someone could point me towards a program that
> calculates the percent amino acid identity between all sequence pairs in a
> multiple sequence alignment?


The program MACBOXSHADE (v2.1)will provide such output, if you are using
the mac platform. There is a windows compiled version of BOXSHADE (a
command-line driven program) at the same site which also has the
matrix-of-identities/similarities option (I think that is version 3.2,
but the numbering of the two programs is quite independent).

http://www.isrec.isb-sib.ch/sib-isrec/boxshade/MacBoxshade/


Michael


michael.baron at bbsrc.ac.uk




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