6-frame EST translation

Jonathan Epstein Jonathan_Epstein at nih.gov
Thu Sep 24 15:48:33 EST 1998


Does anyone have a working program that can compare
mass-spec ion sets obtained from an LCQ instrument against the dbEST
database?

This seems to require a 6-frame translation of dbEST, preferably in
FASTA format.  I realize that many of the translated products will be
bogus.

Does anyone have software to perform this translation?  The preferred
target platform is a DEC alpha running Unix, but Wintel 95/NT and SGI
Irix are also possible candidates.

TIA,

- Jonathan




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