6-frame EST translation
botka at CGL.UCSF.EDU
Thu Sep 24 19:15:20 EST 1998
Jonathan Epstein wrote on Thu, 24 Sep 1998:
> Does anyone have a working program that can compare
> mass-spec ion sets obtained from an LCQ instrument against the
> dbEST database?
> This seems to require a 6-frame translation of dbEST, preferably in
> FASTA format. I realize that many of the translated products will
> be bogus.
> Does anyone have software to perform this translation? The
> preferred target platform is a DEC alpha running Unix, but Wintel
> 95/NT and SGI Irix are also possible candidates.
> - Jonathan
I believe the SEALS package has a program called wimklein that will
do this for you. It's all perl, so it should work for you.
Christopher W Botka Phone: (415)476-5379
Sequence Analysis Consulting Service Fax: (415)502-1755
UCSF Computer Graphics Lab Office: Lib-111
Internet: botka at cgl.ucsf.edu Mail Drop: Box 0446
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