DNA to protein in 6 frames and output in FASTA

Catherine Letondal letondal at pasteur.fr
Tue Apr 20 13:08:40 EST 1999


In article <x690bny4w4.fsf at beagle.bmc.uu.se>, Thomas Sicheritz <Thomas.Sicheritz at molbio.uu.se> writes:
>phains at my-dejanews.com writes:
>
>> Hello all,
>> 
>> I am looking for software (Win9X/NT or UNIX) that will translate a given DNA
>> sequence (in FASTA format) in all six frames and then output this translation
>> in FASTA format. Ideally, it will be able to identify ORFs and exclude
>> non-ORF regions. ie. we want to translate a DNA database into a protein
>> database. If anyone can help with this it would be appreciated.
>
>* nextorf.tcl (requires Biowish) 
>	http://evolution.bmc.uu.se/~thomas/software/biowish/
>* SEALS http://www.ncbi.nlm.nih.gov/Walker/SEALS/index.html
>* perl scripts from http://www.bioperl.org/
>
>Online:
>* http://www2.ebi.ac.uk/translate/
>* http://alces.med.umn.edu/webtrans.html
>* http://www.ncbi.nlm.nih.gov/gorf/gorf.html
>* http://210.72.11.88/neehow/trans.html

one more!

http://bioweb.pasteur.fr/seqanal/interfaces/cds.html

>
>
>-thomas
>-- 
>Sicheritz Ponten Thomas E.  Department of Molecular Biology
>blippblopp at linux.nu         BMC, Uppsala University
>BMC:  +46 18 4714214        BOX 590 S-751 24 UPPSALA Sweden
>Fax   +46 18  557723        http://evolution.bmc.uu.se/~thomas
>Molecular Tcl:   http://evolution.bmc.uu.se/~thomas/tcl
>Molecular Linux: http://evolution.bmc.uu.se/~thomas/mol_linux
>
>	De Chelonian Mobile ... The Turtle Moves ...
>
>

-- 
Catherine Letondal -- letondal at pasteur.fr -- +33 (1) 40 61 31 91




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