HMM - negative scores

Tvenkatesh at Tvenkatesh at
Wed Apr 21 14:22:22 EST 1999

Dear All
Can somebody please explain what do the negative scores in HMM mean?
I used HMMER 2.0 for analysis.

T. V. (Venky) Venkatesh, Ph D
Senior Scientist (Bioinformatics and Molecular Biology)
Synaptic Pharmaceutical Corporation
215 College Road
Paramus NJ 07652 - 1431
201-261-1331x720 (Phone)
Tvenkatesh at

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