Staden Package sequencing course
jkb at mrc-lmb.cam.ac.uk
Mon Aug 2 08:56:30 EST 1999
In October 21st to 23rd inclusively, there is a course entitled
"Sequence Project Management Using the Staden Package".
Full details may be found on:
A summary follows:
The course is designed to provide an introduction to the use of the
latest version of programs produced by Rodger Staden's group for the
management of large-scale DNA sequencing projects. The course is very
practical. Participants will be guided through exercises during which
they will process a substantial set of sequence data obtained from an
ABI automatated DNA sequencers.
In the course of the three days we will cover setting up of a new
sequencing project, pre-processing data generated by automatic
sequencers, creating sequencing project databases, automatic assembly
of batches of reads into contigs, checking and editing contigs, and
use of phred-style confidence values. Checking will include
examination of the traces for conflicting readings, searches for
repeated sequences and analysis of the relative positions of readings
derived from the same template.
James Bonfield (jkb at mrc-lmb.cam.ac.uk) Tel: 01223 402499 Fax: 01223 213556
Medical Research Council - Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 2QH, England.
Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/
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