Urgent request: combined peptide database search
morozov at lion-ag.de
Thu Aug 12 06:59:43 EST 1999
Christian Götting wrote:
> How can I search for matches within the EMBL databases (nr and est) with
> a combination of aminoacid sequences ?
> I do have the aminoacid sequences of 3 peptides (too short for a search
> on its own) and want to do a combined search. Can anyone tell me what
I thing it is not goof idea to combine peptides from different genes. In
the case I would suggest to apply TFastx/TFasty (i.e
As far I remember there is no mimimal lenth for query in FASTA. It seems be
more sensitive than BLAST against DNA (particularly EST) database because a
frame shift is allowed.
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