Parser for ASN.1 or GenBank?
Jonathan_Epstein at nih.gov
Tue Aug 24 13:48:16 EST 1999
perl -MCPAN install Bundle::Convert::BER
Haven't tried it myself. Please let me know if you have any success.
Arne Mueller wrote:
> Hi All,
> I'm looking for some free software to parse GenBank flat file format or
> better ASN.1 format. Is there any perl or better python module available
> to read in an ASN.1 file and to presnet all the information in a
> datastructure (hashes, lists, objects whatever ...)?
> I'm interested in genomic ORFs but flat FASTA amino acid files do not
> provide enough information for my purpose, also I'd like (have) to
> automize most of the dataprocessing. I know there must be a parser
> (written in C) included in the NCBI toolkit but I'd like to have
> something written in perl or python.
> Any suggestions,
> Thanks alot,
> Arne Mueller
> Biomolecular Modelling Laboratory
> Imperial Cancer Research Fund
> 44 Lincoln's Inn Fields
> London WC2A 3PX, U.K.
> phone : +44-(0)171 2693405 | fax :+44-(0)171-269-3534
> email : a.mueller at icrf.icnet.uk | http://www.icnet.uk/bmm/
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