Transmembrane prediction

Catherine Letondal letondal at pasteur.fr
Thu Dec 2 10:25:51 EST 1999


You could as well use the BioNetbook :
http://www.pasteur.fr/recherche/BNB/bnb-en.html
and ask for the word: membrane

or directly:
http://www.pasteur.fr/cgi-bin/biology/bnb_s.pl?query=membrane&english=1


In article <19991201163353.A976 at nhgri.nih.gov>, jfryan at NHGRI.NIH.GOV (Joe Ryan) writes:
>> I'm looking for a transmembrane prediction program, the source code
>> should be free available for academic use. I've to install the program
>> on site for large scale use so I can't use a web-service. I've already
>> tried MEMSAT and TOPPRED2. Both programs seem to overpredict
>> transmembrane helices in some sequences.
>
>This is from an old post to this group.
>
>:> I am looking for software that can predict transmembrane domains in
>:> proteins.
>:
>:Here is a list in no particular order:
>:                        
>:TMPRED:        http://www.ch.embnet.org/software/TMPRED_form.html
>:TopPred2:      http://www.biokemi.su.se/~server/toppred2/
>:DAS:            http://www.biokemi.su.se/~server/DAS/
>:SOSUI:          http://www.tuat.ac.jp/~mitaku/adv_sosui/
>:TMHMM:          http://www.cbs.dtu.dk/services/TMHMM-1.0/
>:HMMTOP:        http://www.enzim.hu/hmmtop/
>:PredictProtein: http://www.embl-heidelberg.de/predictprotein/
>:PSIpred:        http://globin.bio.warwick.ac.uk/psipred/
>:                        
>:TMBASE: http://www.ch.embnet.org/software/tmbase/TMBASE_doc.html
>:(TMBASE is A Database of Membrane Spanning Protein Segments)
>:                        
>:Love,
>:  Joe
>:--
>:Joseph Ryan
>:Programmer
>:National Human Genome Research Institute
>
>
>

-- 
Catherine Letondal -- Pasteur Institute Computing Center




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