assmebly software

Jeffrey Keen t.j.keen at leeds.ac.uk
Thu Dec 16 05:42:37 EST 1999


In article <l03130300b47583fa4af0@[132.183.189.39]>,
bongard at FRODO.MGH.HARVARD.EDU ("Deverie K. Bongard-Pierce") wrote:

> Version 3 of Sequencher does not do as well as the Phred/Phrap/Consed trio
> when it comes to aligning EST sequences with their genomic counterparts-
> alot more editing is need around intron borders,  but again I have heard
> that the ver.4 software does a much better job with these kinds of
> alignments.

If you want to align ESTs and cDNA sequences to genomic DNA you should try
est2genome

http://www.sanger.ac.uk/Software/EMBOSS/Apps/est2genome.shtml




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