Need software to find ORFS, GC content, codon usage

Robert Wolfgang Rumpf rumpf.1 at OSU.EDU
Fri Jan 22 16:19:46 EST 1999


I'm looking for some small, simple programs to do the following:

1.  scan a large bacterial sequence contig for putative ORFs
2.  determine GC content of the above contig
3.  determine codon usage in the above ORFs

I'd prefer freeware/shareware; Mac or Unix/Linux.  Can anyone point me in
the right direction?

Dr. Robert Wolfgang Rumpf * rumpf.1 at osu.edu or genomancer at marcon.org

http://www.marcon.org/users/bob

It is by caffeine alone that I set my mind in motion
By the beans of java, my thoughts acquire speed
The hands acquire the shakes, the shakes become a warning
It is by caffeine alone that I set my mind in motion




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