Genes_in_Pictures (Human/Drosophila)

Victor Solovyev solovyev at sanger.ac.uk
Wed Jul 7 20:24:28 EST 1999


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        Genes_in_Pictures (Human/Drosophila)
==============================================================
Part of Infogen database - Known genes of Human and Drosophila
and Visualization of their functional signals is available at

             http://genomic.sanger.ac.uk/

 These Infogene files and Java Viewer of Gene structures is design by
           Igor Seledtsov and Victor Solovyev for

Infogen is designed as a resource of information about genes
  and their components

Java Viewer will be used for

a) Visually inspection of gene structure in Infogene entries
   of known or predicted genes

b) In interactive Gene prediction in annotation genomic sequences
   from genome sequencing Projects


 HOW TO WORK WITH Genes_in_Pictures: see Help menu in Java Viewer: About
		  Infogene format see Help menu in Java Viewer: Infogen
		  Clicking by mouse you	can see Infogen gene description
                                                       (see Help: About)
  General Picture of GENBANK/INFOGENE content:

   HUMAN GENES IN GENBANK/INFOGENE:

CDS total                      34448
Partial  CDS                   20585
RNA CDS Total                  24306
Partial RNA CDS                13329
DNA CDS Total                  10142
Partial DNA CDS                7256
Exons Total                    36674
Partial Exons                  10985
Exons Total                    36674
Genes Total                    10142
Partial Genes                  8226
Acceptor Site Total                26507
Acceptor Site standart             25902 ( 97.72%)
Acceptor Site putative             3024
Acceptor Site putative standart    2949  ( 97.52%)
Acceptor Site nonputative          23483
Acceptor Site nonputative standart 22953 ( 97.74%)
Donor Site Total                22341
Donor Site standart             21916 ( 98.10%)
Donor Site putative             2662
Donor Site putative standart    2596  ( 97.52%)
Donor Site nonputative          19679
Donor Site nonputative standart 19320 ( 98.18%)
Start codons                    13854
Standart Start codons           13694 ( 98.85%)
Stop codons                     13810
Standart Stop codons            13810 (100.00%)
CAAT-boxes      /Total/Putative/Experimental        405    51     2
TATA-boxes      /Total/Putative/Experimental        802   119    14
TSP (Cap sites) /Total/Putative/Experimental       2554   128   118
PolyA signals   /Total/Putative/Experimental       3548   444    85
PolyA sites     /Total/Putative/Experimental       2066    77    81

   DROSOPHILA MELANOGASTER GENES IN GENBANK/INFOGENE:

CDS total                      3521
Partial  CDS                   1025
RNA CDS Total                  1865
Partial RNA CDS                316
DNA CDS Total                  1656
Partial DNA CDS                709
Exons Total                    4648
Partial Exons                  1840
Exons Total                    4648
Genes Total                    1656
Partial Genes                  753
Acceptor Site Total                3043
Acceptor Site standart             2870 ( 94.31%)
Acceptor Site putative             135
Acceptor Site putative standart    133  ( 98.52%)
Acceptor Site nonputative          2908
Acceptor Site nonputative standart 2737 ( 94.12%)
Donor Site Total                2014
Donor Site standart             1873 ( 93.00%)
Donor Site putative             70
Donor Site putative standart    69   ( 98.57%)
Donor Site nonputative          1944
Donor Site nonputative standart 1804 ( 92.80%)
Start codons                    2496
Standart Start codons           2475 ( 99.16%)
Stop codons                     2476
Standart Stop codons            2476 (100.00)
CAAT-boxes      /Total/Putative/Experimental         39     4     0
TATA-boxes      /Total/Putative/Experimental        217    24     3
TSP (Cap sites) /Total/Putative/Experimental        539    10    35
PolyA signals   /Total/Putative/Experimental        773   104    20
PolyA sites     /Total/Putative/Experimental        420     7    19

-- 
Victor Solovyev
The Sanger Centre, Hinxton, Cambridge CB10 1SA, UK
Email: solovyev at sanger.ac.uk  http://genomic.sanger.ac.uk
Phone: 44-1223-494799  FAX:   44-1223-494919




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