Biomer : MM/MD on the web

Neill White nwhite at scripps.edu
Tue Jul 13 10:56:13 EST 1999


Dear Colleagues,

This is an announcement of the availability of a new molecular
modeling program - Biomer - that is accessible over the web.
It should be useful as an educational tool as well as a means
to generate structures quickly and easily.  It is written in
Java, and version 1.0a has the following features:

Model Builders for:
    nucleic acids (DNA/RNA)
    polypeptides
    polysaccharides
Interactive molecule editor with fragment libraries
Implementation of the AMBER force field
Geometry Optimization with steepest descent / conjugate gradient
Simulated Annealing with molecular dynamics
Reads / Writes PDB files
Exports jpeg, gif, and ppm images

It is located at http://www.scripps.edu/~nwhite/Biomer/index.html

Regards,
Neill White






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