fasta against BLAST2.0 format library
William R. Pearson
wrp at alpha0.bioch.virginia.edu
Fri Nov 5 10:49:40 EST 1999
I've been trying to get fasta33t00 to recognize a library/db in BLAST2.0
format (created by NCBI's formatdb, part of the standalone BLAST package).
I'd like to point it at the library file on the command line.
fasta33 query.fasta /path/to/blastdb
where the actual library files are blastdb.nsq, .nin, and .nhr.
The solution is to put the library type in the library file name argument
fasta33 query.fasta "/path/to/blastdb 12"
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