SeqPup, biosequence editor, version 0.9e release

Don Gilbert gilbertd at bio.indiana.edu
Sat Oct 9 14:38:41 EST 1999


SeqPup, version 0.9e, October 1999

SeqPup is a biological sequence editor and analysis program.  It
includes links to network services and external analysis
programs.  It is usable on common computer systems that support
the Java runtime environment, including Macintosh, MS-Windows and
X-Windows.

This release is easier to install and use.

Features include
  multiple sequence alignment and single sequence editing
  read and write several sequence file formats 
  sequence feature editing, manipulation and marking in prints
  translate dna/protein, consensus, reverse/complement, and distance methods 
  pretty print of alignments and sequences with boxed and shaded regions
  Internet Sequence Retrieval System (SRS), and NCBI-BLAST searches 
  User Plug-in sequence manipulations and analyses
  User-definable links to external analysis programs, including
    ClustalW multiple alignment, CAP contig assembly, tacg restriction map
  Remote program client-server interface, using CORBA protocol 

Additions to this Java release include sequence document and
feature manipulation and display, enhanced sequence file
handling, enhanced drawing/pretty print methods, including PDF
output, user-developed plug-in methods for sequence analysis and
display (Java classes),  improved single-sequence editing,
improved alignment manipulations.

This application is a work in progress; it has bugs still.  
Your comments are welcome. Email:  seqpup at bio.indiana.edu.

Find this software at
  http://iubio.bio.indiana.edu/soft/molbio/seqpup/java/
  ftp://iubio.bio.indiana.edu/molbio/seqpup/java/ 

[this update superceeds version 0.9c of september]

-- Don

--
-- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405
-- gilbertd at bio.indiana.edu




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