dna-sequences

S.W. Rasmussen swr at crc.dk
Sat Oct 23 19:26:11 EST 1999


Hi Bernd,

DNATools may do at least some of the tasks you mention. It contains
several search functions (e.g. blast on local data bases + interface
to NCBI formatdb which allows you to build your own data bases). 
DNATools handles - depending on RAM/MHz - several thousand sequences
in a single project. Look at the homepage at www.crc.dk/phys/dnatools.htm.

Regards

Soeren

Bernd Epping wrote:
> 
> Hello,
> 
> I search for a pc-program (Win-NT or Linux) with the following features:
> 
> 1. DNA-Homology-Searches (around 500 sequences)
> 2. DNA-Sequence String Search
> 3. phylogeny-tree applications
> 4. DNA-Alignment
> 
> I tried a lot of programs, like ARB (linux), Oligo 5.0, Vector NTI,
> Genetrap, Omiga. There is no program which makes a homology-search of
> different sequences. Is there anyone who knows such a program???
> 
> best regards
> 
> Bernd
> 
> --
> ----------------------------------------------------------------------------
> -----------
> Bernd Epping
> Bio-Engineer

-- 
Soeren W. Rasmussen, Dr. scient.
Department of Physiology
Carlsberg Laboratory
Copenhagen, Denmark
swr at crc.dk, http://www.crc.dk/phys




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