transmembrane

Joe Ryan jfryan at NHGRI.NIH.GOV
Mon Sep 20 08:38:47 EST 1999


> I am looking for software that can predict transmembrane domains in
> proteins.

Here is a list in no particular order:

TMPRED:         http://www.ch.embnet.org/software/TMPRED_form.html
TopPred2:       http://www.biokemi.su.se/~server/toppred2/
DAS:            http://www.biokemi.su.se/~server/DAS/
SOSUI:          http://www.tuat.ac.jp/~mitaku/adv_sosui/
TMHMM:          http://www.cbs.dtu.dk/services/TMHMM-1.0/
HMMTOP:         http://www.enzim.hu/hmmtop/
PredictProtein: http://www.embl-heidelberg.de/predictprotein/
PSIpred:        http://globin.bio.warwick.ac.uk/psipred/

TMBASE: http://www.ch.embnet.org/software/tmbase/TMBASE_doc.html
(TMBASE is A Database of Membrane Spanning Protein Segments)

Love,
  Joe
--
Joseph Ryan
Programmer
National Human Genome Research Institute





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