Automating BLAST queries

Joe Ryan jfryan at NHGRI.NIH.GOV
Tue Sep 21 08:03:44 EST 1999


I had to do a very similar task.  I wrote a perl script to automate this
process.  I have posted it on our FTP site...

The script requires the file from Unigene

It also requires NHGRI::Blastall

I hope it is helpful.

Joseph Ryan
National Human Genome Research Institute

On Tue, Sep 21, 1999 at 01:04:07PM +0100, Magnus Lynch wrote:
> Hello,
> I have about 400 gene names and I need to identify a unigene clone
> (preferably IMAGE) which I can use in a microarray. I can do this
> manually using Entrez then a BLAST dbest search however this would take
> forever. Is there a way to automate this process?
> Thanks,
> Magnus Lynch

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