Automating BLAST queries
jfryan at NHGRI.NIH.GOV
Tue Sep 21 08:03:44 EST 1999
I had to do a very similar task. I wrote a perl script to automate this
process. I have posted it on our FTP site...
The script requires the Hs.data file from Unigene
It also requires NHGRI::Blastall
I hope it is helpful.
National Human Genome Research Institute
On Tue, Sep 21, 1999 at 01:04:07PM +0100, Magnus Lynch wrote:
> I have about 400 gene names and I need to identify a unigene clone
> (preferably IMAGE) which I can use in a microarray. I can do this
> manually using Entrez then a BLAST dbest search however this would take
> forever. Is there a way to automate this process?
> Magnus Lynch
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