In article <38E3826A.6A8CE0AA at nospam.net>, <nospam at nospam.net> wrote: >Is there an "out of the box" method for producing separate sequence >lines for each ORF in a genomic sequence? Something suitable for making >a multisequence fasta file would be nice. Try 'getorf' in the EMBOSS package. EMBOSS homepage: http://www.sanger.ac.uk/Software/EMBOSS/