Bioperl?

Chris Upton cupton at uvic.ca
Thu Apr 20 13:23:28 EST 2000


In article <8dj3tm$5hn$1 at news.ycc.yale.edu>, Philipp Pagel
<pagel at abraxas.magic.lan> wrote:

>                 Hi!
> 
> Are there any bioperl users here?
> 
> I am trying to write a littel script to perform remote blast searches witha
> bunch of sequences, but can't get the Blast module to work.
> 
>

Hi,
  Check out our program BLAST Search Updater at  
http://athena.bioc.uvic.ca/genomes/

It will do what you want and much more including put the results into a
HTML table, and search for new database hits since the last time you ran
the script.

It hasn't been heavily tested yet, seems OK on an SGI and LINUX on a PC.

Cheers,
  Chris
-- 
Dept Biochemistry and Microbiology
University of Victoria
Victoria BC





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