"Peptident" or similar with a local database?

Neil Saunders neil.saunders at unsw.edu.au
Wed Aug 30 21:46:03 EST 2000


Does anyone know of a server or a standalone program that will allow you to
search a local protein database using peptide mass fingerprinting data?
I've searched fairly extensively but can only find websites that use the
GenBank/SwissProt/EMBL/Owl etc etc databases.  What we want to do is create
a local database (eg from a FASTA file of ORFs from a complete genome
sequence) and search that.

thanks for any suggestions,

Neil Saunders

--
School of Microbiology & Immunology,
University of New South Wales,
Sydney 2052,
Australia

Ph: +61 2 9385 2093
Fx: +61 2 9385 1591

email: neil.saunders at unsw.edu.au
http://www.crosswinds.net/~nfws/index.htm
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