Functional equivalent of GCG Findpatterns?

Catherine Letondal letondal at pasteur.fr
Wed Jan 19 08:47:32 EST 2000


In article <85vr9r$ff0$1 at jetsam.uits.indiana.edu>, gilbertd at bio.indiana.edu (Don Gilbert) writes:

>Take a look at scan_for_matches/PatScan if you want. It allows

You may find a Web form for scan_for_matches here:
http://bioweb.pasteur.fr/seqanal/interfaces/scan_for_matches.html
You can either enter simple pattern Searching for particular sequences with
mismatches, deletions or insertions. Or enter your own complex patterns file
as described in the documentation.

>you to use simple or complex regular expressions to scan sequence
>data.  It's user interface is not close to GCG's though.
>Written by Ross Overbeek.  Available various places including
> iubio.bio.indiana.edu in the molbio/pattern/ software folder.
>
>- don
>
>--
>-- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405
>-- gilbertd at bio.indiana.edu
>

-- 
Catherine Letondal -- Pasteur Institute Computing Center





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