Functional equivalent of GCG Findpatterns?

Dr. Greg Quinn greg at franklin.burnham-inst.org
Wed Jan 19 10:09:40 EST 2000


Many thanks for all the helpful replies and pointers to online services.
G.

Catherine  Letondal (letondal at pasteur.fr) wrote:
: 
: In article <85vr9r$ff0$1 at jetsam.uits.indiana.edu>, gilbertd at bio.indiana.edu (Don Gilbert) writes:
: 
: >Take a look at scan_for_matches/PatScan if you want. It allows
: 
: You may find a Web form for scan_for_matches here:
: http://bioweb.pasteur.fr/seqanal/interfaces/scan_for_matches.html
: You can either enter simple pattern Searching for particular sequences with
: mismatches, deletions or insertions. Or enter your own complex patterns file
: as described in the documentation.
: 
: >you to use simple or complex regular expressions to scan sequence
: >data.  It's user interface is not close to GCG's though.
: >Written by Ross Overbeek.  Available various places including
: > iubio.bio.indiana.edu in the molbio/pattern/ software folder.
: >
: >- don
: >
: >--
: >-- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405
: >-- gilbertd at bio.indiana.edu
: >
: 
: -- 
: Catherine Letondal -- Pasteur Institute Computing Center

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