Anyone running BSU or DBWatcher on Linux?
sgivan at primus.ca
Sun Jun 18 01:36:30 EST 2000
I have some experience with BSU. In order for BSU to properly set-up the
final index.html file, your sequence files should be of a certain format.
The files in your 'indir' must have the same name as what is present after
the '>' in the first line of the file (the files should be in FASTA format).
The above file should be called 'Gene1' in your 'indir'. Once you get all
of the files in your 'indir' in this format, I think some of your problems
will be solved.
<nospam at nospam.net> wrote in message news:3947D680.E1D6A872 at nospam.net...
> Looking for help setting up either Blast Search Updater, or DBWatcher
> for remote database searching. Both would be using blastcl3, which is
> working well on my system (Redhat 6.1). Does anyone have these
> successfully installed on Linux? BSU seems to be having trouble finding
> the results files in order to put them in it's final index.html output.
> DBWatcher has to be recompiled for use of blastcl3 on Linux, and I've
> run up against a brick wall with a cc make error. Frederic Plewniak has
> been very helpful, but it's slow going. Has anyone done this already?
> Mike Holloway
> holloway-1 at medctr.osu.edu
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