motif search

[Jeffrey Keen]

In article <8bggjr$59d$1 at franklin.ljcrf.edu>,
greg at franklin.burnham-inst.org (Dr. Greg Quinn) wrote:

> TFASTX with a word size of 1?

Thanks, I'll try that, but ideally I wanted to search with a Prosite
pattern or something similar.

> Jeffrey Keen (t.j.keen at leeds.ac.uk) wrote:
> : Can anyone suggest how I can search a nucleotide database with a short
> : protein motif. I had a look at EMBOSS but didn't see anything that might
> : do the job.
> :