motif search

Jeffrey Keen t.j.keen at leeds.ac.uk
Fri Mar 24 15:39:44 EST 2000


In article <8bggjr$59d$1 at franklin.ljcrf.edu>,
greg at franklin.burnham-inst.org (Dr. Greg Quinn) wrote:

> TFASTX with a word size of 1?

Thanks, I'll try that, but ideally I wanted to search with a Prosite
pattern or something similar.

> Jeffrey Keen (t.j.keen at leeds.ac.uk) wrote:
> : Can anyone suggest how I can search a nucleotide database with a short
> : protein motif. I had a look at EMBOSS but didn't see anything that might
> : do the job.
> :





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