extracting domain from a BLAST search

Andrea Hansen webmaster at bioinformatik.de
Wed May 17 13:04:49 EST 2000


crepinau at sb-roscoff.fr (Crépineau Florent) writes:
> I am looking for a software like clustering from X. Guan that would take
> a Blast output (idealy a Psi Blast output) to identify and extract
> domains. Or which would take a multiple alignement output and generate
> domains. Or which would take a set of protein sharing a domain and would
> find and extract that domain.

Hi Florent,
try this:
MVIEW : view Blast results as a multiple alignment
http://bioweb.pasteur.fr/seqanal/interfaces/mview_blast-simple.html

Andrea
-- 
Institut fuer Botanik III    Tel +49 211 81 12339
Heinrich-Heine-Universitaet  Fax +49 211 81 13554
Universitaetsstr.1           email : webmaster at bioinformatik.de 
40225 Duesseldorf            http://www.bioinformatik.de





More information about the Bio-soft mailing list