Alternative to GCG program findpatterns

Catherine Letondal letondal at nefertiti.pasteur.fr
Thu May 25 08:15:51 EST 2000


In article <392C2742.87B0EBD7 at ircm.qc.ca>, Johanne Duhaime <duhaimj at ircm.qc.ca> writes:
>Hi
>
>I am looking for a web site where it would be possible to do the same
>type of analysis that does findpatterns (GCG).  In other words, I would
>like to give a pattern (ex:  GAT(TG){,2}) and a databank (genbank) as a
>target. The program would allow mismatches (at the user requested) and
>returned all the sequences that contain the pattern.
>
>Findpatterns is a very good program but it need to have the databanks
>installed locally.
>
>Thank you in advance
>
>--
>Johanne Duhaime
>


You may look at :
http://www.pasteur.fr/recherche/BNB/bnb-en.html
and search for the word: pattern

or directly:
http://www.pasteur.fr/cgi-bin/biology/bnb_s.pl?english=1&query=pattern

-- 
Catherine Letondal -- Pasteur Institute Computing Center







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