gene structure visualisation software needed

Jeroen Raes jerae at gengenp.rug.ac.be
Mon May 29 08:36:40 EST 2000


Dear all,


Does anybody know of a program to make 'boxed' representations of gene
structures in stead of spending hours to draw them? 

eg. I give the program a sequence --tacga---catg--------gcat-- or some
coordinates (3-7,11-14,23-26) and it returns me something like

--[BOX(lenght=5)]---[BOX(length=4)]--------[BOX(length=4)]

..which would be in jpg or gif or postscript, whatever...

It would also be nice if certain positions could be given different
colours (eg ATG, ORF, conserved areas,...)

thanks!

-- 

Jeroen Raes
Research group of Bioinformatics
Department of Plant Genetics   Tel:32.9.264 87 20   Fax:32.9.264 50 08
University of Ghent, K.L. Ledeganckstraat 35, B-9000 GENT, Belgium
Laboratoire Associe de l'INRA
Vlaams interuniversitair Instituut voor Biotechnologie (VIB)
jerae at gengenp.rug.ac.be         http://www.plantgenetics.rug.ac.be







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