wu-blast, no valid contexts

pludder at acc.umu.se pludder at acc.umu.se
Mon Oct 9 12:42:37 EST 2000


Could someone with more experience from the statistics of blast-searches
etc. tell me the likely reason for the following error when running
wu-blast 2.0a blastn:

Exitcode 23

Warning : the maximum achieveable score of 5373 in context 2 (frame 1)
is less than the cutoff score of 82.

Fatal: There are no valid contexts in the requested search.


Any explanations/suggestions would be welcome, I am running genome level
comparisons using blast and a fair amount of these are popping up, so I
am somewhat concerned.

Per Lundmark, Umea University Sweden
pludder at acc.umu.se


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