assembling bacterial genomes

arnim wiezer awiezer at gwdg.de
Mon Apr 2 04:05:39 EST 2001


Hi !

I´m looking for the "perfect assembling tool" :)
Actually we´re using phrap (staden package) to assemble bacterial
genomes. It is running on a 2 CPU Solaris machine and it´s not very fast
and uses a _lot of memory.

Does anyone know other, better tools for assembling large shotgun
sequencing projects ? Parallel-Versions would be nice.

thanks,

Arnim

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