SEALS Perl scripts from NCBI

Jonathan Epstein jepstein at helix.nih.gov
Thu Aug 2 08:28:41 EST 2001


bioperl.org probably includes all of what you need.

The "BPLite" set of tools are probably your best bet, although I have
used the "BLAST" tools, mostly successfully.

HTH,

- Jonathan


Deano wrote:

> I am trying to use the SEALS scripts from
> http://www.ncbi.nlm.nih.gov/CBBresearch/Walker/SEALS/index.html
> to sort through, literally thousands, of blast files.  The problem is
> the blast parsing scripts are written for the old style blast 2.0
> format and we are using blast 2.1.2.  Has anyone already modified
> these scripts to handle the new format, are there better blast parsing
> scripts that will work with the new format?
>
> Thanks for any info,
>
> Deano
>
> ---





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