Can I scan protein sequences by % proline in 15-mer moving window?

anslo anslo at enitel.no
Fri Aug 31 04:15:44 EST 2001


Hi everyone!

I have a bunch of sequences I would like to scan for proline content.  I have been doing this manually, but this is very time consuming...  I would like to count the percentage of amino acids that are proline in the first 
15 residues of a protein, then move the window one to the right, and count the percentage again, eventually allowing me to draw a graph from this data.

Is there a software package that can do this?  I have access to GCG and EMBOSS in addition to the Internet...

In advance, many thanks,

Andrew Louka
Institute of Immunology
The National Hospital, Oslo, Norway 





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