profile searching

Michael Beckstette mbeckste at hb-networks.de
Mon Feb 12 07:04:47 EST 2001


Hi,

i have developed a new algorithm for approximative pattern matching with 
sequence-profiles (position specific scoring matrices) like the ones in 
PROSITE in complete genomes or large databases. What i need now is
a strategie to convert alignmentblocks to profiles (as PRG profmake does).
Has anyone an idea ?

so long Michael








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