Software for RNA hairpin structure search

Gary Williams gwilliam at
Thu Jun 21 08:21:19 EST 2001

In article <001e01c0fa35$fde61960$d28013d4 at timour>,
Timour Ivashchenko <timour at> wrote:

>Hi, I am looking for free software that can find possible hairpin
>structures in RNA sequence.
>Subroutines in C/C++ and Perl are also welcome.

Try 'palindrome' and 'einverted' in EMBOSS:

Gary Williams               Tel: +44 1223 494522  Fax: +44 1223 494512
mailto:G.Williams at  
Bioinformatics,MRC HGMP Resource Centre,Hinxton,Cambridge, CB10 1SB,UK

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