Announcing Pfam Release 7.5

Mhairi Marshall mhairi.marshall at sanger.ac.uk
Tue Aug 20 06:11:23 EST 2002


Pfam is a collection of protein domain family alignments which were
constructed semi-automatically using profile hidden Markov models.
Pfam families contain functional annotation and cross-references to
other databases.  Query sequences can be searched against the Pfam
library of profile hidden Markov models at the web sites below.

Pfam 7.5 contains 4176 families.  71% of proteins in SWISSPROT 40
and TrEMBL 18 have at least one match to a Pfam family.


For interactive access and searching see URLs

               http://www.sanger.ac.uk/Software/Pfam
               http://pfam.wustl.edu
               http://www.cgr.ki.se/Pfam

The release is also available in flat file by anonymous ftp:

               ftp://ftp.sanger.ac.uk/pub/databases/Pfam/
               ftp://ftp.genetics.wustl.edu/pub/Pfam/
               ftp://ftp.cgr.ki.se/pub/data/Pfam/

The Pfam HMM library is compatible with HMMER2 software, available
from
               http://hmmer.wustl.edu/

and also the Wise2 software, available from

               http://www.sanger.ac.uk/Software/Wise2/

___________________
The Pfam consortium



-- 
_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/_/
Mhairi Marshall                        Wellcome Trust Sanger Institute, 
01223 494724                           Wellcome Trust Genome Campus, 
http://www.sanger.ac.uk/Software/Pfam/ Hinxton, Cambridge CB10 1SA, UK





More information about the Bio-soft mailing list