local homology search

Lee Smith lmsmith at cyllene.uwa.edu.au
Fri Jan 18 07:09:59 EST 2002


Hi Guys

This is what I want to do:
I have a large sequence, from which I have identified all ORFs of 
greater than 30aa in length (there are approx 1000 of these). I want 
to place these ORFs into a file, and then search for homology to 
various protein 'query' sequences.

Can FASTA or  BLAST be used to search local files (I know you can 
search a file of filenames)?
If not, does anyone have any other suggestions?


Cheers

Lee
-- 


Dr Lee Smith
UWA Dept of Microbiology
QEII Medical Centre
Nedlands
WA 6009
Australia

LMSmith at cyllene.uwa.edu.au

08 9346 3587

---





More information about the Bio-soft mailing list