ClustalX help on Win2K platform

Duncan Clark junk at [127.0.0.1]
Mon Jul 8 03:53:52 EST 2002


Hi Folks,

I'm running ClustalX under Win2K.

I want to preset the following parameters if possible at program launch

All under Multiple alignment

GAPOPEN=100
GAPEXT=0
MAXDIV=90

If I put those in as a command line it won't run and if I put a hyphen 
in front of each I get an error message, could not open sequence file..

Basically I want to align mRNa to genomic with of course big gaps. I 
just don't want to remember all the time to alter those parameters.

An easy way?

Many thanks

Duncan


-- 
I love deadlines. I especially like the whooshing noise they make as
they go flying by.

Duncan Clark
GeneSys Ltd.





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