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Accessing NCBI toolkit and HMMER with Java

wparkman at cox.net wparkman at cox.net
Wed Mar 6 04:51:55 EST 2002

I am putting Java JNI wrappers on the C code in the  NCBI Software
Development Toolkit ( ftp://ncbi.nlm.nih.gov/toolbox/ncbi_tools ) and
also on the C code in HMMER ( http://hmmer.wustl.edu ) so that I can
call methods in these programs from  Java classes.
Has anyone done this already?  Are there packages available for
invoking Blast or HMMER from Java?

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