Accessing NCBI toolkit and HMMER with Java

[wparkman at cox.net]

I am putting Java JNI wrappers on the C code in the  NCBI Software
Development Toolkit ( ftp://ncbi.nlm.nih.gov/toolbox/ncbi_tools ) and
also on the C code in HMMER ( http://hmmer.wustl.edu ) so that I can
call methods in these programs from  Java classes.
Has anyone done this already?  Are there packages available for
invoking Blast or HMMER from Java?