We are making GCG plus EMBOSS format databanks of recent GenBank
DNA databank plus non-redundent EMBL, GenPept, PIR and SwissProt
available on a trial basis for public use.
You can fetch these data from IUBio Archive:
Mar 6 22:36 Readme
Mar 6 22:33 emboss.default
Mar 6 22:15 gcgdbconfigure/
Mar 6 18:50 gcgembl/ (rel 69, non-redundant w/ genbank)
Mar 7 00:14 gcggenbank1/ (core genbank, release 128)
Mar 7 13:48 gcggenbank2/ (est,gss of rel 128)
Mar 6 19:11 gcggenpept/
Mar 6 18:46 gcgpir/
Mar 6 19:04 gcgswissprot/
These are gzip compressed, but otherwise should drop into a GCG
system with minor editing of the gcgdbconfigure file
paths. Included are EMBOSS package indices with each data set
(total size about 60 GB uncompressed; 20 GB compressed).
This is a trial to see if those of you
who support GCG/EMBOSS want such a pre-digested set of
data + indices. Let us know if you find it useful.
-- Don Gilbert
-- gilbertd at bio.indiana.edu