IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

gaps in mutialign

mimi9 mimi9mi9 at hotmail.com
Mon Mar 25 04:39:53 EST 2002

I am aligning several protein sequences with clustalx. Some gaps
appear in the result. In order to keep the conserved amino acid(I know
this from previous papers) is same in deferent sequences, I have to
add new gaps into the sequence. But where should I insert it? Could I
insert gaps into Helixs or sheets? Shoud I consider the second
structure? May you give me some suggestion?


More information about the Bio-soft mailing list

Send comments to us at biosci-help [At] net.bio.net