structure superimposition

Andrew Dalke dalke at dalkescientific.com
Thu May 2 05:54:26 EST 2002


Markus Fischer:
>Does anybody know about a command line orientated tool for superimposing
>protein structures on Linux? For the superimposition I'd like to use not
>only c-alpha atoms but also any type of atom pairs.

ProFit from Andrew Martin http://www.bioinf.org.uk/

VMD (code I once worked on) can do some of this as well
  http://www.ks.uiuc.edu/Research/vmd/
  (it's a visualization program but doesn't need to run with a GUI)

                    Andrew
                    dalke at dalkescientific.com







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