finding patterns

bakheet tala at kfshrc.edu.sa
Tue May 7 04:27:21 EST 2002


I have two sets of sequences each is 77 sequences (ranging from 40 b.p
to 5000 b.p.), and I am trying to find out a short pattern that is
found in set 1 but not in set 2 (or the other way) .  Does HMMR  do
the job ? If not which program can help knowing that  I am getting
errors if I  align them. Could you please help in solving this
problem.

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