I have two sets of sequences each is 77 sequences (ranging from 40 b.p
to 5000 b.p.), and I am trying to find out a short pattern that is
found in set 1 but not in set 2 (or the other way) . Does HMMR do
the job ? If not which program can help knowing that I am getting
errors if I align them. Could you please help in solving this
problem.
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