GCG and EMBOSS format public biosequence data availability

Don Gilbert gilbertd at bio.indiana.edu
Mon May 20 12:34:09 EST 2002


We are making GCG plus EMBOSS format databanks of recent GenBank
DNA databank plus non-redundent EMBL, GenPept, PIR and SwissProt
available on a trial basis for public use.   You can fetch these 
data from IUBio Archive:

 ftp://iubio.bio.indiana.edu/biomirror-gcg/

 Mar  6 22:36 Readme
 May 17 12:40 emboss.default.gz
 May 18 02:19 gcgdbconfigure
 May 18 02:19 gcgembl      (release 70, non-redundant w/ genbank)
 May 18 02:18 gcggenbank1  (core genbank, release 129)
 May 18 22:37 gcggenbank2  (est,gss of rel  129)
 May 17 22:13 gcggenpept   (release 129)
 May 17 20:38 gcgpir       (release 71)
 May 17 20:32 gcgswissprot  (release 40)

These are gzip compressed, but otherwise should drop into a GCG 
system with minor editing of the gcgdbconfigure file 
paths.  Included are EMBOSS package indices with each data set
(total size about 60 GB uncompressed; 20 GB compressed).

Let us know if you find it useful.

-- Don Gilbert

-- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405
-- gilbertd at bio.indiana.edu

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