SAM-T02 protein-structure prediction server available

Kevin Karplus karplus at cse.ucsc.edu
Mon Sep 16 06:54:40 EST 2002


		
Now that the CASP5 (http://predictioncenter.llnl.gov/casp5/)
prediction season is finally over, we are announcing the availability
of our new server for predicting protein structure: SAM-T02 is
available at

http://www.soe.ucsc.edu/research/compbio/HMM-apps/T02-query.html

In our tests, it does much better that our previous server (SAM-T99).
Both servers are included in the on-going LiveBench test
(http://bioinfo.pl/LiveBench/), which confirms that the new server is
doing much better than the old, and provides some of the most accurate
alignments of all the servers tested (look at LiveBench's LG1 score).

People wishing to include our server in a meta-server should contact
us for permission---the service is rather compute-intensive, and we'd
prefer not to have to install limitations on its use.

--------------------
Kevin Karplus   karplus at soe.ucsc.edu    http://www.soe.ucsc.edu/~karplus
Professor of Computer Engineering, University of California, Santa Cruz
Undergraduate Director, Bioinformatics
-- 
Kevin Karplus 	karplus at soe.ucsc.edu	http://www.soe.ucsc.edu/~karplus
life member (LAB, Adventure Cycling, American Youth Hostels)
Effective Cycling Instructor #218-ck (lapsed)
Professor of Computer Engineering, University of California, Santa Cruz





More information about the Bio-soft mailing list