I am a software developer in a microbiology lab. EMBOSS has functions such as DREG, PREG to do the regular expression search of a nucleotide sequence. Since most of our own softwares are programmed in JAVA, I am trying to find the JAVA implementation of DREG, PREG, and FUZZNUC and FUZZPRO so that we can import these ambiguity sequence searching functions into our own softwares.

adele adelej at uvic.ca
Tue May 6 04:11:13 EST 2003


 
	Thanks for any help!
	
	Adele
	
	Biochemistry and Microbiology
	University
 of Victoria
	BC, Canada
	
	 Is there Java implementation of sequence searching
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit

I am a software developer in a microbiology lab. EMBOSS has functions 
such as DREG, PREG to do the regular expression search of a nucleotide 
sequence. Since most of our own softwares are programmed in JAVA, I am 
trying to find the JAVA implementation of DREG, PREG, and FUZZNUC and 
FUZZPRO so that we can import these ambiguity sequence searching 
functions into our own softwares.

Thanks for any help!

Adele

Biochemistry and Microbiology
University of Victoria
BC, Canada

adelej at uvic.ca

---





More information about the Bio-soft mailing list