software to remove redundant proteins

Steffen Schmidt Schmidt at EMBL.de
Tue Jan 20 13:50:07 EST 2004


florent.crepineau wrote:

> After a BLAST, many sequences are indeed the same (fragments,
> update, different names....). I am looking for a software to
> reduce the redundancy of this set of protein.

Hi Florent,

I would suggest that you filter the database before you do a BLAST - why 
not using nrdb90/95 for this purpose? See this article
http://bioinformatics.oupjournals.org/cgi/content/abstract/14/5/423

Steffen
---





More information about the Bio-soft mailing list