Retriving sequences from large local databases
swr at seqtools.dk
Fri Apr 1 09:57:57 EST 2005
...and the seqtools software suite at http://www.seqtools.dk
Soeren W. Rasmussen
"David Mathog" <mathog at caltech.edu> wrote in message
news:d1725m$1ka$1 at naig.caltech.edu...
> Rolf wrote:
>> I am running local blast on different databases. This works perfectly.
>> The problem comes when I want to retrieve sequences from the large
>> (and practically not possible to open) databases.
>> Can this be done through the BioEdit program?
>> Other programs?
> I don't know about BioEdit but fastacmd, which is part of the NCBI
> toolkit, can do this.
> So can the demo program in my blastdb_api package. You can pick
> up the source code for that here:
> David Mathog
> mathog at caltech.edu
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