New Fgenesh genefinding parameters for Chicken and Xenopus genome annotation

softberry at softberry.com softberry at softberry.com
Wed Feb 16 09:42:33 EST 2005


New Fgenesh genefinding parameters for Chicken and Xenopus genome annotation

Softberry releases genefinding parameters for Chicken and Xenopus.
 New parameters can be used with FGENESH, FEX and BESTORF and FGENESH+, 
FGENESH_C and FGENESH-2 programs. 
The accuracy of new parameters with FGENESH is 95-97% on the nucleotide level 
with prediction of 95-97% exons and 91-93% exactly predicted exons.

You can find genes in your sequence at:

http://www.softberry.com/berry.phtml?
topic=fgenesh&group=programs&subgroup=gfind

These parameters are added to the set of Fgenesh suit gene-finding parameters 
covering most model organisms:

Human,   Mouse,  Chicken (Aves),  Frog (Xenopodinae,)  Fish,  
Drosophila,  Anopheles gambiae,  C.elegans,  Brugia malayi (parasitic 
nematode),  
Plasmodium falciparum , 
Dicot plants (Arabidopsis),  Nicotiana tabacum,  Monocot plants (Corn, Rice, 
Wheat, Barley)  
Medicago (legume plant),  Algae  
Aspergillus,  Coprinopsis cinerea,  Cryptococcus neoformans,  Fusarium 
graminearum,  
Histoplasma (fungus),  Magnaporthe,  Ustilago,  Phanerochaete chrysosporium 
(white rot),  
Schizosaccharomyces pombe,  Neurospora crassa 


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