[Bio-software] Re: SNP Analysis : Parser for Polybayes result

i.j.nijman at gmail.com i.j.nijman at gmail.com
Tue Jun 20 09:25:17 EST 2006


Hi,

Have you seen this page? There's a simple script which parses the
polybayes output.

Cheers,
Ies Nijman

Elango, Palchamy (ICRISAT-IN) wrote:
> I am using Polybayes program [Author: Prof. Gabor T. Marth] for SNP analysis.
>
> I wish to parse and extract SNP associated information from the output (textual mulitple sequence alignment) of Polybayes program.
>
> Alternatively I am trying out the possibilities of  converting the polybayes alignment output into any standard multiple alignment format, so that I can able to use other SNP analysis programs that read multiple sequence alignment files as input.
>
> I wish to use your parser script or any bioperl / biojava module.
> Does anyone know or use any bioperl /biopython /biojava module ?
> I shall be grateful if you could kindly provide me some tips or additional information on this.
>
> Thanking you
> Elango
> P.Elango
>
> GT-Biotechnology,
> International Crops Research Institute for the Semi-Arid Tropics (ICRISAT),
> Patancheru - 502 324, Andhra Pradesh, India.
> Work:  +(91) 40 307 13321 , Home: +(91) 40  559 98770 /  +(91) 98854 98770 (Mobile)
> pelango at cgiar.org <mailto:pelango at cgiar.org>   www.cgiar.org <http://www.cgiar.org>   elango at palchamy.com <mailto:elango at palchamy.com>



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